The linked sequence file lists up to 10 UShER tips matching the most-common form. Phylogeny panels not drawn (skip_phylo_pages = TRUE in _targets.R).

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} + K478I_NB.1.8.1 — 4 substitutions · 0.00165% of sequences

form: LF.7 + N22T_-A + M153I_RF.5 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + K478I_NB.1.8.1 + K679R_{BA.3.2.1, BA.3.2.2, RF}

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} + K478Q — 4 substitutions · 0.000824% of sequences

form: LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + K478Q + N658T + K679R_{BA.3.2.1, BA.3.2.2, RF}

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + G485S + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 4 substitutions · 0.000824% of sequences

form: LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + H445R_{LP.8, XFG} + G485S + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 4 substitutions · 0.000824% of sequences

form: LF.7 + L441R_{XFJ, PY.1} + H445R_{LP.8, XFG} + A475V_{XFJ, PY.1} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} — 3 substitutions · 1.26% of sequences

form: LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + K679R_{BA.3.2.1, BA.3.2.2, RF}

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.674% of sequences

form: LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L335S + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.0354% of sequences

form: LF.7 + S71F + L335S + A376S + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + H339R + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.0247% of sequences

form: LF.7 + H339R + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + P384S + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.0231% of sequences

form: LF.7 + P384S + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} + K478I_NB.1.8.1 — 3 substitutions · 0.0173% of sequences

form: LF.7 + L441R_{XFJ, PY.1} + R444K_{-A, XFJ} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + K478I_NB.1.8.1 + T791A_XFJ

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K478I_NB.1.8.1 + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.0132% of sequences

form: LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444K_{-A, XFJ} + K478I_NB.1.8.1 + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + A475V_{XFJ, PY.1} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.0115% of sequences

form: LF.7 + H445R_{LP.8, XFG} + A475V_{XFJ, PY.1} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L441R_{XFJ, PY.1} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.0107% of sequences

form: LF.7 + E96D + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG + T678S

Matching sequence names (newest 10)

LF.7 + G485S + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00659% of sequences

form: LF.7 + H445R_{LP.8, XFG} + G485S + P486S_XBB + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG + R681H_{B.1.1.7, BA.1, BA.5, BA.3.2.2, -BA.2}

Matching sequence names (newest 10)

LF.7 + N370K + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00577% of sequences

form: LF.7 + N370K + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + E516Q — 3 substitutions · 0.00577% of sequences

form: LF.7 + L176F + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + E516Q + T572I_XFG + Q677R

Matching sequence names (newest 10)

LF.7 + H339L + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00412% of sequences

form: LF.7 + H339L + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + K462Q + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00412% of sequences

form: LF.7 + E96D + H445P_{XBB, XFJ, PY.1} + K462Q + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG + E1092G + D1146G

Matching sequence names (newest 10)

LF.7 + H339Q + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.0033% of sequences

form: LF.7 + H339Q + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + N334D + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00247% of sequences

form: LF.7 + N334D + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG + S680P

Matching sequence names (newest 10)

LF.7 + D420N + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00247% of sequences

form: LF.7 + A262V + D420N + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + K478I_NB.1.8.1 + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00247% of sequences

form: LF.7 + N22T_-A + H445R_{LP.8, XFG} + K478I_NB.1.8.1 + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + H339R + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} — 3 substitutions · 0.00165% of sequences

form: LF.7 + H339R + T346R_-A + L441R_{XFJ, PY.1} + R444K_{-A, XFJ} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + T791A_XFJ + V1264L_RW.1.1

Matching sequence names (newest 10)

LF.7 + V367A + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00165% of sequences

form: LF.7 + V367A + I434M + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + I434T + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.00165% of sequences

form: LF.7 + I434T + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L335S + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} — 3 substitutions · 0.000824% of sequences

form: LF.7 + L335S + L441R_{XFJ, PY.1} + R444K_{-A, XFJ} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1}

Matching sequence names (newest 10)

LF.7 + L335S + A475V_{XFJ, PY.1} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.000824% of sequences

form: LF.7 + L335S + R444K_{-A, XFJ} + A475V_{XFJ, PY.1} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG}

Matching sequence names (newest 10)

LF.7 + H339R + A475V_{XFJ, PY.1} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.000824% of sequences

form: LF.7 + R182K_-A + F186L_LP.8 + H339R + R444K_{-A, XFJ} + H445R_{LP.8, XFG} + A475V_{XFJ, PY.1} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + K679R_{BA.3.2.1, BA.3.2.2, RF} + K1086R_LP.8 + V1104L_{KP.2, KP.3, LP.8} + Q1201K

Matching sequence names (newest 10)

LF.7 + V367A + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} — 3 substitutions · 0.000824% of sequences

form: LF.7 + V367A + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1}

Matching sequence names (newest 10)

LF.7 + A376D + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.000824% of sequences

form: LF.7 + A376D + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG + A1174V

Matching sequence names (newest 10)

LF.7 + F377Y + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.000824% of sequences

form: LF.7 + E96D + F377Y + H445P_{XBB, XFJ, PY.1} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + T385N + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.000824% of sequences

form: LF.7 + T385N + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} + K478E — 3 substitutions · 0.000824% of sequences

form: LF.7 + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + K478E

Matching sequence names (newest 10)

LF.7 + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} + G485S — 3 substitutions · 0.000824% of sequences

form: LF.7 + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + G485S

Matching sequence names (newest 10)

LF.7 + K478E + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 3 substitutions · 0.000824% of sequences

form: LF.7 + L335F + N417T + H445R_{LP.8, XFG} + K478E + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 2 substitutions · 84.5% of sequences

form: LF.7 + H445R_{LP.8, XFG} + N487D_XFG + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L441R_{XFJ, PY.1} + A475V_{XFJ, PY.1} — 2 substitutions · 2.76% of sequences

form: LF.7 + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1}

Matching sequence names (newest 10)

LF.7 + L335S + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 2 substitutions · 0.0816% of sequences

form: LF.7 + L335S + R444K_{-A, XFJ} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG}

Matching sequence names (newest 10)

LF.7 + A475V_{XFJ, PY.1} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 2 substitutions · 0.0494% of sequences

form: LF.7 + R182K_-A + F186L_LP.8 + R444K_{-A, XFJ} + H445R_{LP.8, XFG} + A475V_{XFJ, PY.1} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + K679R_{BA.3.2.1, BA.3.2.2, RF} + K1086R_LP.8 + V1104L_{KP.2, KP.3, LP.8} + Q1201K

Matching sequence names (newest 10)

LF.7 + K478E + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 2 substitutions · 0.0189% of sequences

form: LF.7 + R444K_{-A, XFJ} + H445R_{LP.8, XFG} + K478E + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + K679R_{BA.3.2.1, BA.3.2.2, RF} + V1104L_{KP.2, KP.3, LP.8} + V1264L_RW.1.1

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + A475V_{XFJ, PY.1} — 2 substitutions · 0.00824% of sequences

form: LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + H445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + S680F

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 2 substitutions · 0.00659% of sequences

form: LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444K_{-A, XFJ} + K478T_{-A, RW.1.1, RF} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + H339R + A475V_{XFJ, PY.1} — 2 substitutions · 0.00412% of sequences

form: LF.7 + H339R + T346R_-A + T356K_-A + A475V_{XFJ, PY.1}

Matching sequence names (newest 10)

LF.7 + A475V_{XFJ, PY.1} + K478I_NB.1.8.1 — 2 substitutions · 0.00412% of sequences

form: LF.7 + A475V_{XFJ, PY.1} + K478I_NB.1.8.1

Matching sequence names (newest 10)

LF.7 + L441R_{XFJ, PY.1} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 2 substitutions · 0.0033% of sequences

form: LF.7 + L441R_{XFJ, PY.1} + R444K_{-A, XFJ} + H445P_{XBB, XFJ, PY.1} + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + V1104L_{KP.2, KP.3, LP.8}

Matching sequence names (newest 10)

LF.7 + F371Y + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 2 substitutions · 0.00247% of sequences

form: LF.7 + F371Y + Q493E_{KP.3, LP.8, NB.1.8.1, XFG}

Matching sequence names (newest 10)

LF.7 + A475V_{XFJ, PY.1} + N487D_XFG — 2 substitutions · 0.00165% of sequences

form: LF.7 + A475V_{XFJ, PY.1} + N487D_XFG

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441R_{XFJ, PY.1} — 2 substitutions · 0.000824% of sequences

form: LF.7 + M153I_RF.5 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441R_{XFJ, PY.1} + H445P_{XBB, XFJ, PY.1} + K478T_{-A, RW.1.1, RF} + K679R_{BA.3.2.1, BA.3.2.2, RF}

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K478I_NB.1.8.1 — 2 substitutions · 0.000824% of sequences

form: LF.7 + R182K_-A + G184S_NB.1.8.1 + S190R_-A + T346R_-A + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444K_{-A, XFJ} + K478I_NB.1.8.1 + P486F_-A + R498Q_-A + Y501N_-A + T572I_XFG

Matching sequence names (newest 10)

LF.7 + A475V_{XFJ, PY.1} + E516Q — 2 substitutions · 0.000824% of sequences

form: LF.7 + A475V_{XFJ, PY.1} + E516Q + S735A

Matching sequence names (newest 10)

LF.7 + K478I_NB.1.8.1 + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 2 substitutions · 0.000824% of sequences

form: LF.7 + H445R_{LP.8, XFG} + K478I_NB.1.8.1 + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG + Q1201H

Matching sequence names (newest 10)

LF.7 + A475V_{XFJ, PY.1} — 1 substitutions · 2.48% of sequences

form: LF.7 + A475V_{XFJ, PY.1}

Matching sequence names (newest 10)

LF.7 + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} — 1 substitutions · 0.743% of sequences

form: LF.7 + H445R_{LP.8, XFG} + P486F_-A + Q493E_{KP.3, LP.8, NB.1.8.1, XFG} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L441R_{XFJ, PY.1} — 1 substitutions · 0.34% of sequences

form: LF.7 + L441R_{XFJ, PY.1} + R444K_{-A, XFJ} + H445P_{XBB, XFJ, PY.1} + K478T_{-A, RW.1.1, RF}

Matching sequence names (newest 10)

LF.7 + N487D_XFG — 1 substitutions · 0.119% of sequences

form: LF.7 + H445R_{LP.8, XFG} + N487D_XFG + T572I_XFG

Matching sequence names (newest 10)

LF.7 + K478I_NB.1.8.1 — 1 substitutions · 0.0651% of sequences

form: LF.7 + H445P_{XBB, XFJ, PY.1} + K478I_NB.1.8.1

Matching sequence names (newest 10)

LF.7 + K478E — 1 substitutions · 0.0445% of sequences

form: LF.7 + H445P_{XBB, XFJ, PY.1} + K478E + T676N

Matching sequence names (newest 10)

LF.7 + P384S — 1 substitutions · 0.00824% of sequences

form: LF.7 + P384S

Matching sequence names (newest 10)

LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} — 1 substitutions · 0.00659% of sequences

form: LF.7 + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + H445P_{XBB, XFJ, PY.1} + T572I_XFG

Matching sequence names (newest 10)

LF.7 + L335S — 1 substitutions · 0.00412% of sequences

form: LF.7 + R273S + L335S

Matching sequence names (newest 10)

LF.7 + N370K — 1 substitutions · 0.00165% of sequences

form: LF.7 + N370K

Matching sequence names (newest 10)

LF.7 + H339R — 1 substitutions · 0.000824% of sequences

form: LF.7 + N22T_-A + S255F + H339R + S680F

Matching sequence names (newest 10)

LF.7 + I434T — 1 substitutions · 0.000824% of sequences

form: LF.7 + I434T + H445P_{XBB, XFJ, PY.1} + K478T_{-A, RW.1.1, RF} + G946R + A1174V

Matching sequence names (newest 10)

LF.7 + K462T — 1 substitutions · 0.000824% of sequences

form: LF.7 + K462T + T572I_XFG + S680P

Matching sequence names (newest 10)