← index NB.1.8.1_matched — Selecting groups of interesting substitutions

Threshold-defined substitution groups

Barnes 1, 1/2, 2 & escape & LCR

10 substitution(s) match

Trees marked with these substitutions →

Sequences containing combinations of these substitutions →

Trees marked with sequences containing combinations of these substitutions →

• Barnes 1, 1/2, 2 & escape & LCR : escape_minus_updown_effect ≥ 0.05, lcr ≥ 1, n_obs ≥ 2, poslabel_antigenic_region ∈ {RBD Barnes 1, RBD Barnes 1/2, RBD Barnes 2} ±1 residues

Barnes 1/2, 2 & LCR

19 substitution(s) match

Trees marked with these substitutions →

Sequences containing combinations of these substitutions →

Trees marked with sequences containing combinations of these substitutions →

• Barnes 1/2, 2 & LCR : lcr ≥ 1, n_obs ≥ 2, poslabel_antigenic_region ∈ {RBD Barnes 2/3, RBD Barnes 3} ±1 residues

Barnes & escape & LCR

18 substitution(s) match

Trees marked with these substitutions →

Sequences containing combinations of these substitutions →

Trees marked with sequences containing combinations of these substitutions →

• Barnes & escape & LCR : escape_minus_updown_effect ≥ 0.1, lcr ≥ 0.5, n_obs ≥ 1, poslabel_antigenic_region ∈ {RBD Barnes 1, RBD Barnes 1/2, RBD Barnes 2, RBD Barnes 2/3, RBD Barnes 2/4, RBD Barnes 3, RBD Barnes 4} ±2 residues

Barnes & LCR

71 substitution(s) match

Trees marked with these substitutions →

Sequences containing combinations of these substitutions →

Trees marked with sequences containing combinations of these substitutions →

• Barnes & LCR : lcr ≥ 0.5, poslabel_antigenic_region ∈ {RBD Barnes 1, RBD Barnes 1/2, RBD Barnes 2, RBD Barnes 2/3, RBD Barnes 2/4, RBD Barnes 3, RBD Barnes 4} ±2 residues

Barnes & very LCR

29 substitution(s) match

Trees marked with these substitutions →

Sequences containing combinations of these substitutions →

Trees marked with sequences containing combinations of these substitutions →

• Barnes & very LCR : lcr ≥ 2, poslabel_antigenic_region ∈ {RBD Barnes 1, RBD Barnes 1/2, RBD Barnes 2, RBD Barnes 2/3, RBD Barnes 2/4, RBD Barnes 3, RBD Barnes 4} ±2 residues

ACE2 proximal & LCR

49 substitution(s) match

Trees marked with these substitutions →

Sequences containing combinations of these substitutions →

Trees marked with sequences containing combinations of these substitutions →

• ACE2 proximal & LCR : lcr ≥ 0.5, poslabel_ace2_proximity ∈ {proximal} ±2 residues

RF.5 branch subs

4 substitution(s) match

Trees marked with these substitutions →

Sequences containing combinations of these substitutions →

Trees marked with sequences containing combinations of these substitutions →

• RF.5 branch subs : substitution ∈ {444R, 441R, 445P, 475V, 435S, 478T}

XFG & RF.5 branch subs

6 substitution(s) match

Trees marked with these substitutions →

Sequences containing combinations of these substitutions →

Trees marked with sequences containing combinations of these substitutions →

• XFG & RF.5 branch subs : substitution ∈ {444R, 441R, 445P, 475V, 435S, 478T, 445R, 487D}