The linked sequence file lists up to 10 UShER tips matching the most-common form. Phylogeny panels not drawn (skip_phylo_pages = TRUE in _targets.R).

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} + S446N — 4 substitutions · 0.00191% of sequences

form: XFG + V120F + I326V_{BA.3.2.1, BA.3.2.2} + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + R444K_{-A, XFJ} + R445P_{XBB, XFJ, PY.1} + S446N + D450N_-A + S455L_-A + L456F_-A + P486F_-A + D487N_-A + V1128L

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441I + S446N — 3 substitutions · 0.0469% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441I + S446N

Matching sequence names (newest 10)

XFG + S408G + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} — 3 substitutions · 0.0134% of sequences

form: XFG + E96D + S408G + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + L335S + A376S + P486L — 3 substitutions · 0.0105% of sequences

form: XFG + S71F + L335S + A376S + P486L

Matching sequence names (newest 10)

XFG + L335F + T345S + S446N — 3 substitutions · 0.00479% of sequences

form: XFG + L335F + T345S + S446N + A1174V

Matching sequence names (newest 10)

XFG + L335F + K440R_{BA.3.2.1, BA.3.2.2} + L441I — 3 substitutions · 0.00287% of sequences

form: XFG + L335F + K440R_{BA.3.2.1, BA.3.2.2} + L441I + P486F_-A

Matching sequence names (newest 10)

XFG + L335F + R445L + S446N — 3 substitutions · 0.00287% of sequences

form: XFG + L335F + R445L + S446N + A1174V

Matching sequence names (newest 10)

XFG + L335F + S446N + G482S — 3 substitutions · 0.00287% of sequences

form: XFG + L335F + S446N + G482S + A1174V

Matching sequence names (newest 10)

XFG + L335F + N417T + K440R_{BA.3.2.1, BA.3.2.2} — 3 substitutions · 0.00191% of sequences

form: XFG + L335F + N417T + K440R_{BA.3.2.1, BA.3.2.2}

Matching sequence names (newest 10)

XFG + L335F + N417T + P486L — 3 substitutions · 0.00191% of sequences

form: XFG + L335F + N417T + P486L

Matching sequence names (newest 10)

XFG + L335F + L441F + S446N — 3 substitutions · 0.00191% of sequences

form: XFG + N22T_-A + L335F + L441F + S446N + K679R_{BA.3.2.1, BA.3.2.2, RF} + V1264L_RW.1.1

Matching sequence names (newest 10)

XFG + L335F + S446N + T500A — 3 substitutions · 0.00191% of sequences

form: XFG + L335F + S446N + T500A + A1174V

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} + S446N — 3 substitutions · 0.00191% of sequences

form: XFG + F216L_-A + R357I + F377L + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} + S446N + I468T + D487N_-A + S591P + V642G_{BA.3.2.1, BA.3.2.2} + K679R_{BA.3.2.1, BA.3.2.2, RF} + S689N + P793S + D1084G + A1087S + V1264L_RW.1.1

Matching sequence names (newest 10)

XFG + L335F + N417T + K478E — 3 substitutions · 0.000957% of sequences

form: XFG + L335F + N417T + K478E

Matching sequence names (newest 10)

XFG + L335F + S446N + P486L — 3 substitutions · 0.000957% of sequences

form: XFG + L335F + S446N + P486L + A1174V

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + L441I — 3 substitutions · 0.000957% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + L441I

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} + G482R — 3 substitutions · 0.000957% of sequences

form: XFG + E96D + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} + G482R + C1243F

Matching sequence names (newest 10)

XFG + L441I + S446N + P486L — 3 substitutions · 0.000957% of sequences

form: XFG + L441I + S446N + P486L

Matching sequence names (newest 10)

XFG + L335F + S446N — 2 substitutions · 0.645% of sequences

form: XFG + L335F + S446N + A1174V

Matching sequence names (newest 10)

XFG + L335F + N417T — 2 substitutions · 0.421% of sequences

form: XFG + L335F + N417T

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441I — 2 substitutions · 0.109% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441I

Matching sequence names (newest 10)

XFG + L441I + S446N — 2 substitutions · 0.107% of sequences

form: XFG + L441I + S446N

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.0507% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R445P_{XBB, XFJ, PY.1} + G932S

Matching sequence names (newest 10)

XFG + L335S + A376S — 2 substitutions · 0.0297% of sequences

form: XFG + S71F + L335S + A376S

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + P486L — 2 substitutions · 0.0287% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + P486L

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + G482S — 2 substitutions · 0.0191% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + G482S

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + P486S_XBB — 2 substitutions · 0.0172% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + P486S_XBB

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K478I_NB.1.8.1 — 2 substitutions · 0.0163% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444K_{-A, XFJ} + R445H_-JN.1 + K478I_NB.1.8.1 + D487N_-A

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + T500A — 2 substitutions · 0.0144% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + T500A + A783V + D1146G

Matching sequence names (newest 10)

XFG + L441I + K478R — 2 substitutions · 0.0115% of sequences

form: XFG + L441I + K478R

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.0105% of sequences

form: XFG + E96D + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + L441R_{XFJ, PY.1} + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00957% of sequences

form: XFG + E96D + L441R_{XFJ, PY.1} + R445P_{XBB, XFJ, PY.1} + T678S

Matching sequence names (newest 10)

XFG + T346I + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00574% of sequences

form: XFG + E96D + T346I + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + L441I + R445L — 2 substitutions · 0.00574% of sequences

form: XFG + N22T_-A + D253G + L441I + R444K_{-A, XFJ} + R445L + Q1208H

Matching sequence names (newest 10)

XFG + L441I + P486L — 2 substitutions · 0.00574% of sequences

form: XFG + L441I + P486L

Matching sequence names (newest 10)

XFG + L335F + L441I — 2 substitutions · 0.00383% of sequences

form: XFG + L335F + L441I

Matching sequence names (newest 10)

XFG + L335F + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00383% of sequences

form: XFG + L335F + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + A376S + L441I — 2 substitutions · 0.00383% of sequences

form: XFG + A376S + L441I

Matching sequence names (newest 10)

XFG + N439K + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00383% of sequences

form: XFG + E96D + N439K + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + P486L — 2 substitutions · 0.00287% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + P486L

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + L441I — 2 substitutions · 0.00287% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2} + L441I

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + P486L — 2 substitutions · 0.00287% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2} + P486L

Matching sequence names (newest 10)

XFG + L441I + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00287% of sequences

form: XFG + L441I + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + K462Q — 2 substitutions · 0.00287% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + K462Q + E1092G + D1146G

Matching sequence names (newest 10)

XFG + L335F + K440R_{BA.3.2.1, BA.3.2.2} — 2 substitutions · 0.00191% of sequences

form: XFG + W258R + L335F + K440R_{BA.3.2.1, BA.3.2.2}

Matching sequence names (newest 10)

XFG + L335F + R445L — 2 substitutions · 0.00191% of sequences

form: XFG + L335F + R444K_{-A, XFJ} + R445L

Matching sequence names (newest 10)

XFG + L335F + W452R_{B.1.617.2, BA.5} — 2 substitutions · 0.00191% of sequences

form: XFG + N22T_-A + L335F + W452R_{B.1.617.2, BA.5} + A1174V

Matching sequence names (newest 10)

XFG + L335F + T500A — 2 substitutions · 0.00191% of sequences

form: XFG + L335F + T500A + S680F + L1224F

Matching sequence names (newest 10)

XFG + A376S + K440R_{BA.3.2.1, BA.3.2.2} — 2 substitutions · 0.00191% of sequences

form: XFG + A376S + K440R_{BA.3.2.1, BA.3.2.2}

Matching sequence names (newest 10)

XFG + T385I + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00191% of sequences

form: XFG + E96D + T385I + R445P_{XBB, XFJ, PY.1} + P486F_-A

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444T — 2 substitutions · 0.00191% of sequences

form: XFG + D138H + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444T

Matching sequence names (newest 10)

XFG + L441I + P486S_XBB — 2 substitutions · 0.00191% of sequences

form: XFG + L441I + P486S_XBB + D487N_-A

Matching sequence names (newest 10)

XFG + L441I + T500A — 2 substitutions · 0.00191% of sequences

form: XFG + L441I + T500A

Matching sequence names (newest 10)

XFG + L441I + E516Q — 2 substitutions · 0.00191% of sequences

form: XFG + L441I + E516Q

Matching sequence names (newest 10)

XFG + T333K + L441I — 2 substitutions · 0.000957% of sequences

form: XFG + T333K + L441I

Matching sequence names (newest 10)

XFG + L335F + T345S — 2 substitutions · 0.000957% of sequences

form: XFG + L335F + T345S

Matching sequence names (newest 10)

XFG + L335F + T430I — 2 substitutions · 0.000957% of sequences

form: XFG + L335F + T430I + L922F

Matching sequence names (newest 10)

XFG + L335F + R444T — 2 substitutions · 0.000957% of sequences

form: XFG + L335F + R444T

Matching sequence names (newest 10)

XFG + L335F + G482S — 2 substitutions · 0.000957% of sequences

form: XFG + L335F + G482S + L922F

Matching sequence names (newest 10)

XFG + L335F + P486L — 2 substitutions · 0.000957% of sequences

form: XFG + W258R + L335F + P486L

Matching sequence names (newest 10)

XFG + H339R + R445L — 2 substitutions · 0.000957% of sequences

form: XFG + L176F + H339R + T346R_-A + P373S_-A + R444K_{-A, XFJ} + R445L + D450N_-A + S455L_-A + L456F_-A

Matching sequence names (newest 10)

XFG + T345S + K440R_{BA.3.2.1, BA.3.2.2} — 2 substitutions · 0.000957% of sequences

form: XFG + G219D + T345S + K440R_{BA.3.2.1, BA.3.2.2} + S1170Y

Matching sequence names (newest 10)

XFG + T345S + L441I — 2 substitutions · 0.000957% of sequences

form: XFG + G219D + T345S + L441I

Matching sequence names (newest 10)

XFG + T346I + G482S — 2 substitutions · 0.000957% of sequences

form: XFG + T346I + G482S + K529T + T604I + V1264L_RW.1.1

Matching sequence names (newest 10)

XFG + A376S + L456V — 2 substitutions · 0.000957% of sequences

form: XFG + A376S + L456V

Matching sequence names (newest 10)

XFG + F377Y + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.000957% of sequences

form: XFG + E96D + F377Y + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + T385I + K440R_{BA.3.2.1, BA.3.2.2} — 2 substitutions · 0.000957% of sequences

form: XFG + G257V + T385I + K440R_{BA.3.2.1, BA.3.2.2} + S680P

Matching sequence names (newest 10)

XFG + T385I + W452R_{B.1.617.2, BA.5} — 2 substitutions · 0.000957% of sequences

form: XFG + T385I + W452R_{B.1.617.2, BA.5}

Matching sequence names (newest 10)

XFG + S408G + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.000957% of sequences

form: XFG + E96D + S408G + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + T430I + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.000957% of sequences

form: XFG + E96D + T430I + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} — 2 substitutions · 0.000957% of sequences

form: XFG + K147Q + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + N532D + S680F

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441F — 2 substitutions · 0.000957% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441F + Q677H + S704L_{BA.3.2.1, BA.3.2.2}

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + G482S — 2 substitutions · 0.000957% of sequences

form: XFG + K147Q + S254F + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + G482S + N532D + S680F

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + P486S_XBB — 2 substitutions · 0.000957% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + P486S_XBB + N532D + S680F

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445L — 2 substitutions · 0.000957% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445L

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + K481R — 2 substitutions · 0.000957% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2} + K481R

Matching sequence names (newest 10)

XFG + L441F + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.000957% of sequences

form: XFG + E96Y + L441F + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + L441I + A475S — 2 substitutions · 0.000957% of sequences

form: XFG + L441I + A475S

Matching sequence names (newest 10)

XFG + L441I + K481R — 2 substitutions · 0.000957% of sequences

form: XFG + L441I + K481R + K679R_{BA.3.2.1, BA.3.2.2, RF}

Matching sequence names (newest 10)

XFG + L441I + K481T — 2 substitutions · 0.000957% of sequences

form: XFG + L441I + K481T

Matching sequence names (newest 10)

XFG + L441I + G482S — 2 substitutions · 0.000957% of sequences

form: XFG + L441I + G482S + S689R

Matching sequence names (newest 10)

XFG + L441I + K484R — 2 substitutions · 0.000957% of sequences

form: XFG + S151I + L441I + K484R

Matching sequence names (newest 10)

XFG + L441I + P499T — 2 substitutions · 0.000957% of sequences

form: XFG + L441I + R498Q_-A + P499T

Matching sequence names (newest 10)

XFG + R445L + W452S — 2 substitutions · 0.000957% of sequences

form: XFG + R445L + D450N_-A + W452S

Matching sequence names (newest 10)

XFG + R445L + P486L — 2 substitutions · 0.000957% of sequences

form: XFG + R445L + P486L

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + S446N — 2 substitutions · 0.000957% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + S446N

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} — 2 substitutions · 0.000957% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + A475V_{XFJ, PY.1} + A688V

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + K478R — 2 substitutions · 0.000957% of sequences

form: XFG + N22T_-A + E96D + R445P_{XBB, XFJ, PY.1} + K478R

Matching sequence names (newest 10)

XFG + S446N + K481R — 2 substitutions · 0.000957% of sequences

form: XFG + S446N + K481R + D1084G

Matching sequence names (newest 10)

XFG + G482S + S494P — 2 substitutions · 0.000957% of sequences

form: XFG + G482S + D487N_-A + S494P

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} — 1 substitutions · 5.47% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + L441I — 1 substitutions · 3.72% of sequences

form: XFG + L441I

Matching sequence names (newest 10)

XFG + L335F — 1 substitutions · 1.6% of sequences

form: XFG + L335F

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} — 1 substitutions · 0.574% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF}

Matching sequence names (newest 10)

XFG + A376S — 1 substitutions · 0.417% of sequences

form: XFG + A376S

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} — 1 substitutions · 0.23% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2}

Matching sequence names (newest 10)

XFG + P486L — 1 substitutions · 0.158% of sequences

form: XFG + P486L

Matching sequence names (newest 10)

XFG + T345S — 1 substitutions · 0.108% of sequences

form: XFG + G219D + T345S

Matching sequence names (newest 10)

XFG + N417T — 1 substitutions · 0.0929% of sequences

form: XFG + N417T

Matching sequence names (newest 10)

XFG + T346I — 1 substitutions · 0.09% of sequences

form: XFG + T346I + K529T + T604I + V1264L_RW.1.1

Matching sequence names (newest 10)