The linked sequence file lists up to 10 UShER tips matching the most-common form. Phylogeny panels not drawn (skip_phylo_pages = TRUE in _targets.R).

XFG + L335F + K440R_{BA.3.2.1, BA.3.2.2} + L441I — 3 substitutions · 0.00287% of sequences

form: XFG + L335F + K440R_{BA.3.2.1, BA.3.2.2} + L441I + P486F_-A

Matching sequence names (newest 10)

XFG + L335F + N417T + K440R_{BA.3.2.1, BA.3.2.2} — 3 substitutions · 0.00191% of sequences

form: XFG + L335F + N417T + K440R_{BA.3.2.1, BA.3.2.2}

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} — 3 substitutions · 0.00191% of sequences

form: XFG + V120F + I326V_{BA.3.2.1, BA.3.2.2} + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + R444K_{-A, XFJ} + R445P_{XBB, XFJ, PY.1} + S446N + D450N_-A + S455L_-A + L456F_-A + P486F_-A + D487N_-A + V1128L

Matching sequence names (newest 10)

XFG + L335F + N417T + K478E — 3 substitutions · 0.000957% of sequences

form: XFG + L335F + N417T + K478E

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + L441I — 3 substitutions · 0.000957% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + L441I

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} + G482R — 3 substitutions · 0.000957% of sequences

form: XFG + E96D + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} + G482R + C1243F

Matching sequence names (newest 10)

XFG + L335F + N417T — 2 substitutions · 0.423% of sequences

form: XFG + L335F + N417T

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441I — 2 substitutions · 0.156% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + L441I

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.0507% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R445P_{XBB, XFJ, PY.1} + G932S

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.0259% of sequences

form: XFG + E96D + S408G + K440R_{BA.3.2.1, BA.3.2.2} + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + G482S — 2 substitutions · 0.0191% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + G482S

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K478I_NB.1.8.1 — 2 substitutions · 0.0163% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444K_{-A, XFJ} + R445H_-JN.1 + K478I_NB.1.8.1 + D487N_-A

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + T500A — 2 substitutions · 0.0144% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + T500A + A783V + D1146G

Matching sequence names (newest 10)

XFG + L441I + K478R — 2 substitutions · 0.0115% of sequences

form: XFG + L441I + K478R

Matching sequence names (newest 10)

XFG + L441R_{XFJ, PY.1} + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00957% of sequences

form: XFG + E96D + L441R_{XFJ, PY.1} + R445P_{XBB, XFJ, PY.1} + T678S

Matching sequence names (newest 10)

XFG + L335F + T345S — 2 substitutions · 0.00574% of sequences

form: XFG + L335F + T345S + S446N + A1174V

Matching sequence names (newest 10)

XFG + L441I + R445L — 2 substitutions · 0.00574% of sequences

form: XFG + N22T_-A + D253G + L441I + R444K_{-A, XFJ} + R445L + Q1208H

Matching sequence names (newest 10)

XFG + L335F + R445L — 2 substitutions · 0.00479% of sequences

form: XFG + L335F + R445L + S446N + A1174V

Matching sequence names (newest 10)

XFG + L335F + L441I — 2 substitutions · 0.00383% of sequences

form: XFG + L335F + L441I

Matching sequence names (newest 10)

XFG + L335F + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00383% of sequences

form: XFG + L335F + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + L335F + G482S — 2 substitutions · 0.00383% of sequences

form: XFG + L335F + S446N + G482S + A1174V

Matching sequence names (newest 10)

XFG + L335F + T500A — 2 substitutions · 0.00383% of sequences

form: XFG + L335F + S446N + T500A + A1174V

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + L441I — 2 substitutions · 0.00287% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2} + L441I

Matching sequence names (newest 10)

XFG + L441I + R445P_{XBB, XFJ, PY.1} — 2 substitutions · 0.00287% of sequences

form: XFG + L441I + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + K462Q — 2 substitutions · 0.00287% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1} + K462Q + E1092G + D1146G

Matching sequence names (newest 10)

XFG + L335F + K440R_{BA.3.2.1, BA.3.2.2} — 2 substitutions · 0.00191% of sequences

form: XFG + W258R + L335F + K440R_{BA.3.2.1, BA.3.2.2}

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444T — 2 substitutions · 0.00191% of sequences

form: XFG + D138H + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + R444T

Matching sequence names (newest 10)

XFG + L441I + T500A — 2 substitutions · 0.00191% of sequences

form: XFG + L441I + T500A

Matching sequence names (newest 10)

XFG + L335F + R444T — 2 substitutions · 0.000957% of sequences

form: XFG + L335F + R444T

Matching sequence names (newest 10)

XFG + H339R + R445L — 2 substitutions · 0.000957% of sequences

form: XFG + L176F + H339R + T346R_-A + P373S_-A + R444K_{-A, XFJ} + R445L + D450N_-A + S455L_-A + L456F_-A

Matching sequence names (newest 10)

XFG + T345S + K440R_{BA.3.2.1, BA.3.2.2} — 2 substitutions · 0.000957% of sequences

form: XFG + G219D + T345S + K440R_{BA.3.2.1, BA.3.2.2} + S1170Y

Matching sequence names (newest 10)

XFG + T345S + L441I — 2 substitutions · 0.000957% of sequences

form: XFG + G219D + T345S + L441I

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} — 2 substitutions · 0.000957% of sequences

form: XFG + K147Q + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + K440R_{BA.3.2.1, BA.3.2.2} + N532D + S680F

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + G482S — 2 substitutions · 0.000957% of sequences

form: XFG + K147Q + S254F + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} + G482S + N532D + S680F

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445L — 2 substitutions · 0.000957% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2} + R445L

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} + K481R — 2 substitutions · 0.000957% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2} + K481R

Matching sequence names (newest 10)

XFG + L441I + K481R — 2 substitutions · 0.000957% of sequences

form: XFG + L441I + K481R + K679R_{BA.3.2.1, BA.3.2.2, RF}

Matching sequence names (newest 10)

XFG + L441I + G482S — 2 substitutions · 0.000957% of sequences

form: XFG + L441I + G482S + S689R

Matching sequence names (newest 10)

XFG + L441I + K484R — 2 substitutions · 0.000957% of sequences

form: XFG + S151I + L441I + K484R

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} + K478R — 2 substitutions · 0.000957% of sequences

form: XFG + N22T_-A + E96D + R445P_{XBB, XFJ, PY.1} + K478R

Matching sequence names (newest 10)

XFG + R445P_{XBB, XFJ, PY.1} — 1 substitutions · 5.53% of sequences

form: XFG + E96D + R445P_{XBB, XFJ, PY.1}

Matching sequence names (newest 10)

XFG + L441I — 1 substitutions · 3.84% of sequences

form: XFG + L441I

Matching sequence names (newest 10)

XFG + L335F — 1 substitutions · 2.25% of sequences

form: XFG + L335F

Matching sequence names (newest 10)

XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF} — 1 substitutions · 0.579% of sequences

form: XFG + A435S_{BA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF}

Matching sequence names (newest 10)

XFG + K440R_{BA.3.2.1, BA.3.2.2} — 1 substitutions · 0.236% of sequences

form: XFG + K440R_{BA.3.2.1, BA.3.2.2}

Matching sequence names (newest 10)

XFG + T345S — 1 substitutions · 0.108% of sequences

form: XFG + G219D + T345S

Matching sequence names (newest 10)

XFG + N417T — 1 substitutions · 0.0929% of sequences

form: XFG + N417T

Matching sequence names (newest 10)

XFG + R445L — 1 substitutions · 0.0776% of sequences

form: XFG + R444K_{-A, XFJ} + R445L

Matching sequence names (newest 10)

XFG + G482S — 1 substitutions · 0.0622% of sequences

form: XFG + G482S

Matching sequence names (newest 10)

XFG + K478R — 1 substitutions · 0.0345% of sequences

form: XFG + K478R

Matching sequence names (newest 10)

XFG + H339R — 1 substitutions · 0.0278% of sequences

form: XFG + H339R

Matching sequence names (newest 10)

XFG + K481R — 1 substitutions · 0.023% of sequences

form: XFG + K481R

Matching sequence names (newest 10)

XFG + K478E — 1 substitutions · 0.022% of sequences

form: XFG + R444K_{-A, XFJ} + K478E + D487N_-A + I572T_-A + K679R_{BA.3.2.1, BA.3.2.2, RF} + V1104L_{KP.2, KP.3, LP.8} + V1264L_RW.1.1

Matching sequence names (newest 10)

XFG + T500A — 1 substitutions · 0.022% of sequences

form: XFG + T500A

Matching sequence names (newest 10)

XFG + E340Q — 1 substitutions · 0.0191% of sequences

form: XFG + E340Q

Matching sequence names (newest 10)

XFG + Y473F — 1 substitutions · 0.0182% of sequences

form: XFG + Y473F

Matching sequence names (newest 10)

XFG + K484R — 1 substitutions · 0.0182% of sequences

form: XFG + K484R

Matching sequence names (newest 10)

XFG + T346K — 1 substitutions · 0.0153% of sequences

form: XFG + T346K

Matching sequence names (newest 10)

XFG + G482R — 1 substitutions · 0.00766% of sequences

form: XFG + G482R

Matching sequence names (newest 10)

XFG + R444T — 1 substitutions · 0.00574% of sequences

form: XFG + R444T

Matching sequence names (newest 10)

XFG + H339L — 1 substitutions · 0.00479% of sequences

form: XFG + H339L

Matching sequence names (newest 10)

XFG + L441V — 1 substitutions · 0.00383% of sequences

form: XFG + L441V + T678I

Matching sequence names (newest 10)

XFG + K478I_NB.1.8.1 — 1 substitutions · 0.00383% of sequences

form: XFG + N22T_-A + K478I_NB.1.8.1

Matching sequence names (newest 10)

XFG + L441R_{XFJ, PY.1} — 1 substitutions · 0.00287% of sequences

form: XFG + L441R_{XFJ, PY.1}

Matching sequence names (newest 10)

XFG + T356N — 1 substitutions · 0.00191% of sequences

form: XFG + T356N

Matching sequence names (newest 10)

XFG + K462Q — 1 substitutions · 0.00191% of sequences

form: XFG + T299I + K462Q + V635A + T638I + K679R_{BA.3.2.1, BA.3.2.2, RF} + V1264L_RW.1.1

Matching sequence names (newest 10)