Each row is one combination of substitutions in an "interesting substitution group" seen in a natural sequence.
Members: 335F, 337R, 339L, 339R, 340Q, 346I. Root-only baseline: 1,531 sequences (99.67%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| XFJ + E340Q | 1 | 2 | 0.13% | XFJ.3.1 (2) | XFJ + E340Q + K679N-A + V1264LRW.1.1 | 2 | XFJ.3.1 (2) | XFJ + E340Q + K679N-A + V1264LRW.1.1 |
| XFJ + T346I | 1 | 2 | 0.13% | XFJ.3.1 (2) | XFJ + T346I + V1264LRW.1.1 | 2 | XFJ.3.1 (2) | XFJ + T346I + V1264LRW.1.1 |
| XFJ + H339R | 1 | 1 | 0.0651% | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 | 1 | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 |
Members: 335F, 337R, 339L, 339R, 340Q, 345S, 346I, 346K, 440R, 445L, 446N. Root-only baseline: 1,527 sequences (99.41%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| XFJ + E340Q | 1 | 2 | 0.13% | XFJ.3.1 (2) | XFJ + E340Q + K679N-A + V1264LRW.1.1 | 2 | XFJ.3.1 (2) | XFJ + E340Q + K679N-A + V1264LRW.1.1 |
| XFJ + T346I | 1 | 2 | 0.13% | XFJ.3.1 (2) | XFJ + T346I + V1264LRW.1.1 | 2 | XFJ.3.1 (2) | XFJ + T346I + V1264LRW.1.1 |
| XFJ + K440RBA.3.2.1, BA.3.2.2 | 1 | 2 | 0.13% | XFJ.2.1 (1); XFJ.8 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 | 1 | XFJ.8 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 |
| XFJ + P445L | 1 | 2 | 0.13% | RW.1.1 (2) | XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + P445L + K478T-A, RW.1.1, RF + V1264LRW.1.1 | 2 | RW.1.1 (2) | RW.1.1 + P445L |
| XFJ + H339R | 1 | 1 | 0.0651% | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 | 1 | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 |
Members: 335S, 339L, 339R, 371Y, 377Y, 435S, 462Q, 462T, 478E, 478Q, 487D, 493E, 516Q. Root-only baseline: 1,416 sequences (92.19%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 1 | 117 | 7.62% | RW.1.1 (115); XFJ.1.1 (2) | XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + V1264LRW.1.1 | 58 | RW.1.1 (58) | RW.1.1 |
| XFJ + L335S | 1 | 1 | 0.0651% | XFJ.1 (1) | XFJ + L335S + A791T-A | 1 | XFJ.1 (1) | XFJ + L335S + A791T-A |
| XFJ + H339R | 1 | 1 | 0.0651% | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 | 1 | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 |
| XFJ + Q493EKP.3, LP.8, NB.1.8.1, XFG | 1 | 1 | 0.0651% | XFJ.2 (1) | XFJ + R441L-A + P445RLP.8, XFG + V475A-A + Q493EKP.3, LP.8, NB.1.8.1, XFG | 1 | XFJ.2 (1) | LF.7 + R444K-A, XFJ + H445RLP.8, XFG + Q493EKP.3, LP.8, NB.1.8.1, XFG + T791AXFJ |
Members: 333K, 334T, 335F, 335S, 337R, 339L, 339R, 340Q, 345S, 346A, 346I, 346K, 346S, 356N, 369F, 370T, 371Y, 372P, 376S, 377Y, 384T, 385I, 385P, 406Q, 408G, 417T, 429Y, 430I, 430P, 434L, 435S, 436S, 439K, 440R, 441H, 445L, 446N, 452R, 452S, 453F, 456V, 462Q, 462T, 468L, 473F, 474K, 478E, 478I, 478Q, 478R, 481E, 481R, 481T, 482R, 482S, 484R, 485A, 486L, 486S, 487D, 487T, 490Y, 493E, 494P, 499H, 499T, 500A, 500N, 503I, 516Q, 518I. Root-only baseline: 1,383 sequences (90.04%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + P445L | 2 | 2 | 0.13% | RW.1.1 (2) | XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + P445L + K478T-A, RW.1.1, RF + V1264LRW.1.1 | 2 | RW.1.1 (2) | RW.1.1 + P445L |
| XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 | 2 | 1 | 0.0651% | XFJ.2.1 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 | 1 | XFJ.2.1 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 |
| XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 1 | 115 | 7.49% | RW.1.1 (113); XFJ.1.1 (2) | XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + V1264LRW.1.1 | 58 | RW.1.1 (58) | RW.1.1 |
| XFJ + K478INB.1.8.1 | 1 | 19 | 1.24% | XFJ.2.1 (16); XFJ.3.1 (2); LF.7.9 (1) | XFJ + K478INB.1.8.1 | 12 | XFJ.2.1 (11); LF.7.9 (1) | XFJ + K478INB.1.8.1 |
| XFJ + E340Q | 1 | 2 | 0.13% | XFJ.3.1 (2) | XFJ + E340Q + K679N-A + V1264LRW.1.1 | 2 | XFJ.3.1 (2) | XFJ + E340Q + K679N-A + V1264LRW.1.1 |
| XFJ + T346I | 1 | 2 | 0.13% | XFJ.3.1 (2) | XFJ + T346I + V1264LRW.1.1 | 2 | XFJ.3.1 (2) | XFJ + T346I + V1264LRW.1.1 |
| XFJ + K478R | 1 | 2 | 0.13% | XFJ.3.1 (1); XFJ.6 (1) | XFJ + K478R | 1 | XFJ.6 (1) | XFJ + K478R |
| XFJ + P486L | 1 | 2 | 0.13% | XFJ.10 (1); XFJ.3.1.4 (1) | XFJ + P486L + A1078T | 1 | XFJ.10 (1) | XFJ + P486L + A1078T |
| XFJ + L335S | 1 | 1 | 0.0651% | XFJ.1 (1) | XFJ + L335S + A791T-A | 1 | XFJ.1 (1) | XFJ + L335S + A791T-A |
| XFJ + H339R | 1 | 1 | 0.0651% | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 | 1 | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 |
| XFJ + T430I | 1 | 1 | 0.0651% | XFJ.4.1 (1) | XFJ + K150N + T430I + K478T-A, RW.1.1, RF | 1 | XFJ.4.1 (1) | XFJ + K150N + T430I + K478T-A, RW.1.1, RF |
| XFJ + K440RBA.3.2.1, BA.3.2.2 | 1 | 1 | 0.0651% | XFJ.8 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 | 1 | XFJ.8 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 |
| XFJ + K481E | 1 | 1 | 0.0651% | XFJ.2.2 (1) | XFJ + K481E | 1 | XFJ.2.2 (1) | XFJ + K481E |
| XFJ + G485A | 1 | 1 | 0.0651% | RA.1 (1) | XFJ + T236S + G485A + K679N-A + V1264LRW.1.1 | 1 | RA.1 (1) | XFJ + T236S + G485A + K679N-A + V1264LRW.1.1 |
| XFJ + P486SXBB | 1 | 1 | 0.0651% | XFJ.6 (1) | XFJ + P486SXBB | 1 | XFJ.6 (1) | XFJ + P486SXBB |
| XFJ + Q493EKP.3, LP.8, NB.1.8.1, XFG | 1 | 1 | 0.0651% | XFJ.2 (1) | XFJ + R441L-A + P445RLP.8, XFG + V475A-A + Q493EKP.3, LP.8, NB.1.8.1, XFG | 1 | XFJ.2 (1) | LF.7 + R444K-A, XFJ + H445RLP.8, XFG + Q493EKP.3, LP.8, NB.1.8.1, XFG + T791AXFJ |
Members: 335F, 339L, 339R, 340Q, 345S, 346K, 356N, 417T, 430P, 435S, 440R, 462Q, 473F, 478E, 478I, 478R, 481R, 482R, 482S, 484R, 487D, 487T, 493E, 500A. Root-only baseline: 1,392 sequences (90.62%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 | 2 | 1 | 0.0651% | XFJ.2.1 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 | 1 | XFJ.2.1 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 |
| XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 1 | 117 | 7.62% | RW.1.1 (115); XFJ.1.1 (2) | XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + V1264LRW.1.1 | 58 | RW.1.1 (58) | RW.1.1 |
| XFJ + K478INB.1.8.1 | 1 | 19 | 1.24% | XFJ.2.1 (16); XFJ.3.1 (2); LF.7.9 (1) | XFJ + K478INB.1.8.1 | 12 | XFJ.2.1 (11); LF.7.9 (1) | XFJ + K478INB.1.8.1 |
| XFJ + E340Q | 1 | 2 | 0.13% | XFJ.3.1 (2) | XFJ + E340Q + K679N-A + V1264LRW.1.1 | 2 | XFJ.3.1 (2) | XFJ + E340Q + K679N-A + V1264LRW.1.1 |
| XFJ + K478R | 1 | 2 | 0.13% | XFJ.3.1 (1); XFJ.6 (1) | XFJ + K478R | 1 | XFJ.6 (1) | XFJ + K478R |
| XFJ + H339R | 1 | 1 | 0.0651% | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 | 1 | XFJ.8.1 (1) | XFJ + H339R + T346R-A + V1264LRW.1.1 |
| XFJ + K440RBA.3.2.1, BA.3.2.2 | 1 | 1 | 0.0651% | XFJ.8 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 | 1 | XFJ.8 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 |
| XFJ + Q493EKP.3, LP.8, NB.1.8.1, XFG | 1 | 1 | 0.0651% | XFJ.2 (1) | XFJ + R441L-A + P445RLP.8, XFG + V475A-A + Q493EKP.3, LP.8, NB.1.8.1, XFG | 1 | XFJ.2 (1) | LF.7 + R444K-A, XFJ + H445RLP.8, XFG + Q493EKP.3, LP.8, NB.1.8.1, XFG + T791AXFJ |
Members: 406Q, 408G, 417T, 435S, 436S, 439K, 440R, 441H, 445L, 446N, 452R, 452S, 453F, 456V, 473F, 474K, 478E, 478I, 478Q, 478R, 481E, 481R, 481T, 482R, 482S, 484R, 485A, 486L, 486S, 487D, 487T, 490Y, 493E, 494P, 499H, 499T, 500A, 500N, 503I, 508H, 508F. Root-only baseline: 1,390 sequences (90.49%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + P445L | 2 | 2 | 0.13% | RW.1.1 (2) | XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + P445L + K478T-A, RW.1.1, RF + V1264LRW.1.1 | 2 | RW.1.1 (2) | RW.1.1 + P445L |
| XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 | 2 | 1 | 0.0651% | XFJ.2.1 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 | 1 | XFJ.2.1 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 + K478INB.1.8.1 |
| XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 1 | 115 | 7.49% | RW.1.1 (113); XFJ.1.1 (2) | XFJ + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + V1264LRW.1.1 | 58 | RW.1.1 (58) | RW.1.1 |
| XFJ + K478INB.1.8.1 | 1 | 19 | 1.24% | XFJ.2.1 (16); XFJ.3.1 (2); LF.7.9 (1) | XFJ + K478INB.1.8.1 | 12 | XFJ.2.1 (11); LF.7.9 (1) | XFJ + K478INB.1.8.1 |
| XFJ + K478R | 1 | 2 | 0.13% | XFJ.3.1 (1); XFJ.6 (1) | XFJ + K478R | 1 | XFJ.6 (1) | XFJ + K478R |
| XFJ + P486L | 1 | 2 | 0.13% | XFJ.10 (1); XFJ.3.1.4 (1) | XFJ + P486L + A1078T | 1 | XFJ.10 (1) | XFJ + P486L + A1078T |
| XFJ + K440RBA.3.2.1, BA.3.2.2 | 1 | 1 | 0.0651% | XFJ.8 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 | 1 | XFJ.8 (1) | XFJ + K440RBA.3.2.1, BA.3.2.2 |
| XFJ + K481E | 1 | 1 | 0.0651% | XFJ.2.2 (1) | XFJ + K481E | 1 | XFJ.2.2 (1) | XFJ + K481E |
| XFJ + G485A | 1 | 1 | 0.0651% | RA.1 (1) | XFJ + T236S + G485A + K679N-A + V1264LRW.1.1 | 1 | RA.1 (1) | XFJ + T236S + G485A + K679N-A + V1264LRW.1.1 |
| XFJ + P486SXBB | 1 | 1 | 0.0651% | XFJ.6 (1) | XFJ + P486SXBB | 1 | XFJ.6 (1) | XFJ + P486SXBB |
| XFJ + Q493EKP.3, LP.8, NB.1.8.1, XFG | 1 | 1 | 0.0651% | XFJ.2 (1) | XFJ + R441L-A + P445RLP.8, XFG + V475A-A + Q493EKP.3, LP.8, NB.1.8.1, XFG | 1 | XFJ.2 (1) | LF.7 + R444K-A, XFJ + H445RLP.8, XFG + Q493EKP.3, LP.8, NB.1.8.1, XFG + T791AXFJ |