Each row is one combination of substitutions in an "interesting substitution group" seen in a natural sequence.
Members: 335F, 337R, 339L, 339R, 340Q, 346I, 440R. Root-only baseline: 2,250 sequences (99.96%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| PY.1 + H339R | 1 | 1 | 0.0444% | PY.1.4 (1) | PY.1 + H339R | 1 | PY.1.4 (1) | PY.1 + H339R |
Members: 335F, 337R, 339L, 339R, 340Q, 345S, 346I, 346K, 440R, 444T, 445L, 446N. Root-only baseline: 2,247 sequences (99.82%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| PY.1 + T346K | 1 | 2 | 0.0888% | PY.1.1.1 (2) | PY.1 + T346K + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 2 | PY.1.1.1 (2) | RF + T346K + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + H339R | 1 | 1 | 0.0444% | PY.1.4 (1) | PY.1 + H339R | 1 | PY.1.4 (1) | PY.1 + H339R |
| PY.1 + P445L | 1 | 1 | 0.0444% | PY.1 (1) | PY.1 + R444K-A, XFJ + P445L + N477S-A | 1 | PY.1 (1) | XFJ + P445L + N477S-A + A791T-A |
Members: 335S, 339L, 339R, 371Y, 377Y, 435S, 462Q, 462T, 478E, 478Q, 487D, 493E, 516Q. Root-only baseline: 847 sequences (37.63%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478Q | 2 | 1 | 0.0444% | PY.1.1.1 (1) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478Q + N658T + K679RBA.3.2.1, BA.3.2.2, RF | 1 | PY.1.1.1 (1) | RF + T478Q + N658T |
| PY.1 + N487DXFG + Q493EKP.3, LP.8, NB.1.8.1, XFG | 2 | 1 | 0.0444% | PY.1.3 (1) | PY.1 + P445RLP.8, XFG + N487DXFG + Q493EKP.3, LP.8, NB.1.8.1, XFG + T572IXFG | 1 | PY.1.3 (1) | XFG + L441RXFJ, PY.1 + A475VXFJ, PY.1 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 1 | 1,401 | 62.2% | PY.1.1.1 (465); RF.5.1 (374); RF.1 (165) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 586 | PY.1.1.1 (398); RF.1 (155); RF.4 (17) | RF + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + H339R | 1 | 1 | 0.0444% | PY.1.4 (1) | PY.1 + H339R | 1 | PY.1.4 (1) | PY.1 + H339R |
Members: 333K, 334T, 335F, 335S, 337R, 339L, 339R, 340Q, 345S, 346A, 346I, 346K, 346S, 356N, 369F, 370T, 371Y, 372P, 376S, 377Y, 384T, 385I, 385P, 406Q, 408G, 417T, 429Y, 430I, 430P, 434L, 435S, 436S, 439K, 440R, 441H, 444S, 444T, 445L, 446N, 452R, 452S, 453F, 456V, 462Q, 462T, 468L, 473F, 474K, 478E, 478I, 478Q, 478R, 481E, 481R, 481T, 482R, 482S, 484R, 485A, 486L, 486S, 487D, 487T, 490Y, 493E, 494P, 499H, 499T, 500A, 500N, 503I, 516Q, 518I. Root-only baseline: 836 sequences (37.14%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| PY.1 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + Y453F | 3 | 1 | 0.0444% | RF.5.3 (1) | PY.1 + M153IRF.5 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + Y453F + K478T-A, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 1 | RF.5.3 (1) | RF.5 + N417T + Y453F |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K481R | 2 | 3 | 0.133% | RF.1 (2); RF.5.1 (1) | PY.1 + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + K481R + K679RBA.3.2.1, BA.3.2.2, RF + A706S | 1 | RF.5.1 (1) | RF.5 + K481R + A706S |
| PY.1 + T346K + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 2 | 2 | 0.0888% | PY.1.1.1 (2) | PY.1 + T346K + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 2 | PY.1.1.1 (2) | RF + T346K + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 2 | 2 | 0.0888% | RF.5.3 (2) | PY.1 + W64R + M153IRF.5 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 2 | RF.5.3 (2) | RF.5 + W64R + N417T |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478INB.1.8.1 | 2 | 2 | 0.0888% | PY.1.1.1 (2) | PY.1 + N22T-A + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478INB.1.8.1 + K679RBA.3.2.1, BA.3.2.2, RF | 2 | PY.1.1.1 (2) | RF.5 + N22T-A + T478INB.1.8.1 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + T500A | 2 | 2 | 0.0888% | RF.5.1 (2) | PY.1 + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + T500A + K679RBA.3.2.1, BA.3.2.2, RF | 2 | RF.5.1 (2) | RF.5 + T500A |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + R444S | 2 | 1 | 0.0444% | PY.1.1.1 (1) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + R444S + K679RBA.3.2.1, BA.3.2.2, RF | 1 | PY.1.1.1 (1) | RF + R444S + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478Q | 2 | 1 | 0.0444% | PY.1.1.1 (1) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478Q + N658T + K679RBA.3.2.1, BA.3.2.2, RF | 1 | PY.1.1.1 (1) | RF + T478Q + N658T |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K484R | 2 | 1 | 0.0444% | PY.1.1.1 (1) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K484R + K679RBA.3.2.1, BA.3.2.2, RF + D1184N | 1 | PY.1.1.1 (1) | RF + T478KB.1.617.2, BA.1, BA.5, -BA.2 + K484R + D1184N |
| PY.1 + N487DXFG + Q493EKP.3, LP.8, NB.1.8.1, XFG | 2 | 1 | 0.0444% | PY.1.3 (1) | PY.1 + P445RLP.8, XFG + N487DXFG + Q493EKP.3, LP.8, NB.1.8.1, XFG + T572IXFG | 1 | PY.1.3 (1) | XFG + L441RXFJ, PY.1 + A475VXFJ, PY.1 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 1 | 1,387 | 61.6% | PY.1.1.1 (459); RF.5.1 (371); RF.1 (163) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 586 | PY.1.1.1 (398); RF.1 (155); RF.4 (17) | RF + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + W452RB.1.617.2, BA.5 | 1 | 4 | 0.178% | PY.1.3 (4) | PY.1 + W452RB.1.617.2, BA.5 | 4 | PY.1.3 (4) | PY.1 + W452RB.1.617.2, BA.5 |
| PY.1 + W436S | 1 | 2 | 0.0888% | RF.5 (2) | PY.1 + M153IRF.5 + W436S + K478T-A, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 2 | RF.5 (2) | RF.5 + S435A-A + W436S |
| PY.1 + H339R | 1 | 1 | 0.0444% | PY.1.4 (1) | PY.1 + H339R | 1 | PY.1.4 (1) | PY.1 + H339R |
| PY.1 + P445L | 1 | 1 | 0.0444% | PY.1 (1) | PY.1 + R444K-A, XFJ + P445L + N477S-A | 1 | PY.1 (1) | XFJ + P445L + N477S-A + A791T-A |
| PY.1 + Q474K | 1 | 1 | 0.0444% | PY.1.4 (1) | PY.1 + Q474K | 1 | PY.1.4 (1) | PY.1 + Q474K |
| PY.1 + P486L | 1 | 1 | 0.0444% | PY.1.2 (1) | PY.1 + M153IRF.5 + P486L | 1 | PY.1.2 (1) | PY.1 + M153IRF.5 + P486L |
| PY.1 + P486SXBB | 1 | 1 | 0.0444% | PY.1.5 (1) | PY.1 + K478T-A, RW.1.1, RF + P486SXBB | 1 | PY.1.5 (1) | PY.1 + K478T-A, RW.1.1, RF + P486SXBB |
| PY.1 + S494P | 1 | 1 | 0.0444% | PY.1 (1) | PY.1 + S494P | 1 | PY.1 (1) | PY.1 + S494P |
Members: 335F, 339L, 339R, 340Q, 345S, 346K, 356N, 417T, 430P, 435S, 440R, 444T, 462Q, 473F, 478E, 478I, 478R, 481R, 482R, 482S, 484R, 487D, 487T, 493E, 500A. Root-only baseline: 847 sequences (37.63%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| PY.1 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 2 | 3 | 0.133% | RF.5.3 (3) | PY.1 + W64R + M153IRF.5 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 2 | RF.5.3 (2) | RF.5 + W64R + N417T |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K481R | 2 | 3 | 0.133% | RF.1 (2); RF.5.1 (1) | PY.1 + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + K481R + K679RBA.3.2.1, BA.3.2.2, RF + A706S | 1 | RF.5.1 (1) | RF.5 + K481R + A706S |
| PY.1 + T346K + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 2 | 2 | 0.0888% | PY.1.1.1 (2) | PY.1 + T346K + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 2 | PY.1.1.1 (2) | RF + T346K + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478INB.1.8.1 | 2 | 2 | 0.0888% | PY.1.1.1 (2) | PY.1 + N22T-A + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478INB.1.8.1 + K679RBA.3.2.1, BA.3.2.2, RF | 2 | PY.1.1.1 (2) | RF.5 + N22T-A + T478INB.1.8.1 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + T500A | 2 | 2 | 0.0888% | RF.5.1 (2) | PY.1 + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + T500A + K679RBA.3.2.1, BA.3.2.2, RF | 2 | RF.5.1 (2) | RF.5 + T500A |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K484R | 2 | 1 | 0.0444% | PY.1.1.1 (1) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K484R + K679RBA.3.2.1, BA.3.2.2, RF + D1184N | 1 | PY.1.1.1 (1) | RF + T478KB.1.617.2, BA.1, BA.5, -BA.2 + K484R + D1184N |
| PY.1 + N487DXFG + Q493EKP.3, LP.8, NB.1.8.1, XFG | 2 | 1 | 0.0444% | PY.1.3 (1) | PY.1 + P445RLP.8, XFG + N487DXFG + Q493EKP.3, LP.8, NB.1.8.1, XFG + T572IXFG | 1 | PY.1.3 (1) | XFG + L441RXFJ, PY.1 + A475VXFJ, PY.1 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 1 | 1,389 | 61.7% | PY.1.1.1 (461); RF.5.1 (371); RF.1 (163) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 586 | PY.1.1.1 (398); RF.1 (155); RF.4 (17) | RF + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + H339R | 1 | 1 | 0.0444% | PY.1.4 (1) | PY.1 + H339R | 1 | PY.1.4 (1) | PY.1 + H339R |
Members: 406Q, 408G, 417T, 435S, 436S, 439K, 440R, 441H, 444S, 444T, 445L, 446N, 452R, 452S, 453F, 456V, 473F, 474K, 478E, 478I, 478Q, 478R, 481E, 481R, 481T, 482R, 482S, 484R, 485A, 486L, 486S, 487D, 487T, 490Y, 493E, 494P, 499H, 499T, 500A, 500N, 503I, 508H, 508F. Root-only baseline: 837 sequences (37.18%).
Trees & matching sequences for this group →
| combination | n subs | seqs | freq | top pango (combination) | most common form | n form | top pango (most common form) | most common form (vs closest pango) |
|---|---|---|---|---|---|---|---|---|
| PY.1 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + Y453F | 3 | 1 | 0.0444% | RF.5.3 (1) | PY.1 + M153IRF.5 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + Y453F + K478T-A, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 1 | RF.5.3 (1) | RF.5 + N417T + Y453F |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K481R | 2 | 3 | 0.133% | RF.1 (2); RF.5.1 (1) | PY.1 + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + K481R + K679RBA.3.2.1, BA.3.2.2, RF + A706S | 1 | RF.5.1 (1) | RF.5 + K481R + A706S |
| PY.1 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 2 | 2 | 0.0888% | RF.5.3 (2) | PY.1 + W64R + M153IRF.5 + N417T + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 2 | RF.5.3 (2) | RF.5 + W64R + N417T |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478INB.1.8.1 | 2 | 2 | 0.0888% | PY.1.1.1 (2) | PY.1 + N22T-A + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478INB.1.8.1 + K679RBA.3.2.1, BA.3.2.2, RF | 2 | PY.1.1.1 (2) | RF.5 + N22T-A + T478INB.1.8.1 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + T500A | 2 | 2 | 0.0888% | RF.5.1 (2) | PY.1 + M153IRF.5 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478T-A, RW.1.1, RF + T500A + K679RBA.3.2.1, BA.3.2.2, RF | 2 | RF.5.1 (2) | RF.5 + T500A |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + R444S | 2 | 1 | 0.0444% | PY.1.1.1 (1) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + R444S + K679RBA.3.2.1, BA.3.2.2, RF | 1 | PY.1.1.1 (1) | RF + R444S + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478Q | 2 | 1 | 0.0444% | PY.1.1.1 (1) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K478Q + N658T + K679RBA.3.2.1, BA.3.2.2, RF | 1 | PY.1.1.1 (1) | RF + T478Q + N658T |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K484R | 2 | 1 | 0.0444% | PY.1.1.1 (1) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K484R + K679RBA.3.2.1, BA.3.2.2, RF + D1184N | 1 | PY.1.1.1 (1) | RF + T478KB.1.617.2, BA.1, BA.5, -BA.2 + K484R + D1184N |
| PY.1 + N487DXFG + Q493EKP.3, LP.8, NB.1.8.1, XFG | 2 | 1 | 0.0444% | PY.1.3 (1) | PY.1 + P445RLP.8, XFG + N487DXFG + Q493EKP.3, LP.8, NB.1.8.1, XFG + T572IXFG | 1 | PY.1.3 (1) | XFG + L441RXFJ, PY.1 + A475VXFJ, PY.1 |
| PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF | 1 | 1,389 | 61.7% | PY.1.1.1 (461); RF.5.1 (371); RF.1 (163) | PY.1 + A435SBA.3.2.1, BA.3.2.2, NB.1.8.1, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 586 | PY.1.1.1 (398); RF.1 (155); RF.4 (17) | RF + T478KB.1.617.2, BA.1, BA.5, -BA.2 |
| PY.1 + W452RB.1.617.2, BA.5 | 1 | 4 | 0.178% | PY.1.3 (4) | PY.1 + W452RB.1.617.2, BA.5 | 4 | PY.1.3 (4) | PY.1 + W452RB.1.617.2, BA.5 |
| PY.1 + W436S | 1 | 2 | 0.0888% | RF.5 (2) | PY.1 + M153IRF.5 + W436S + K478T-A, RW.1.1, RF + K679RBA.3.2.1, BA.3.2.2, RF | 2 | RF.5 (2) | RF.5 + S435A-A + W436S |
| PY.1 + P445L | 1 | 1 | 0.0444% | PY.1 (1) | PY.1 + R444K-A, XFJ + P445L + N477S-A | 1 | PY.1 (1) | XFJ + P445L + N477S-A + A791T-A |
| PY.1 + Q474K | 1 | 1 | 0.0444% | PY.1.4 (1) | PY.1 + Q474K | 1 | PY.1.4 (1) | PY.1 + Q474K |
| PY.1 + P486L | 1 | 1 | 0.0444% | PY.1.2 (1) | PY.1 + M153IRF.5 + P486L | 1 | PY.1.2 (1) | PY.1 + M153IRF.5 + P486L |
| PY.1 + P486SXBB | 1 | 1 | 0.0444% | PY.1.5 (1) | PY.1 + K478T-A, RW.1.1, RF + P486SXBB | 1 | PY.1.5 (1) | PY.1 + K478T-A, RW.1.1, RF + P486SXBB |
| PY.1 + S494P | 1 | 1 | 0.0444% | PY.1 (1) | PY.1 + S494P | 1 | PY.1 (1) | PY.1 + S494P |